STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DksADnaK suppressor protein; Best Blastp hit = gi|10175164|dbj|BAB06263.1| (AP001515) BH2544; unknown conserved protein [Bacillus halodurans], score 99.4, E-value 3.00E-20. (206 aa)    
Predicted Functional Partners:
TTE1573
Hypothetical protein.
 
     0.874
RpoC
DNA-directed RNA polymerase beta subunit/160 kD subunit (split gene in archaea and Syn); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.843
RpoB
DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.799
RpoZ
DNA-directed RNA polymerase subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
 0.747
RpoA
DNA-directed RNA polymerase alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.730
RpmJ
Ribosomal protein L36; Best Blastp hit = gi|132921|sp|P20278|RL36_BACSU 50S RIBOSOMAL PROTEIN L36 (RIBOSOMAL PROTEIN II) (RIBOSOMAL PROTEIN B) (BL38) gi|80372|pir||B32307 ribosomal protein L36 - Bacillus subtilis gi|142460|gb|AAA22214.1| (M26414) ribosomal protein B [Bacillus subtilis] gi|1044988|gb|AAB06823.1| (L47971) ribosomal protein B [Bacillus subtilis] gi|2632407|emb|CAB11916.1| (Z99104) ribosomal protein L36 (ribosomal protein B) [Bacillus subtilis], score 74.7, E-value 2.00E-13; Belongs to the bacterial ribosomal protein bL36 family.
   
  
 0.690
CinA
Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Best Blastp hit = gi|1842440|gb|AAB47708.1| (U87792) CinA [Bacillus subtilis], score 354, E-value 1.00E-96; Belongs to the CinA family.
  
  
 0.624
HisI
Phosphoribosyl-AMP cyclohydrolase; Best Blastp hit = gi|6175609|gb|AAF05095.1|AF150930_4 (AF150930) phosphoribosyl-AMP cyclohydrolase [Thermoanaerobacter ethanolicus], score 237, E-value 8.00E-62; In the C-terminal section; belongs to the PRA-PH family.
   
  
 0.617
RpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.593
GuaB
IMP dehydrogenase/GMP reductase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.586
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.