STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1684Conserved hypothetical protein; Best Blastp hit = gi|7462353|pir||H72380 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi|4980915|gb|AAD35495.1|AE001720_9 (AE001720) conserved hypothetical protein [Thermotoga maritima], score 132, E-value 2.00E-30. (145 aa)    
Predicted Functional Partners:
mutS2
MutS-like ATPases involved in mismatch repair, family 1; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.842
TTE1687
Hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
       0.842
TTE1686
Collagenase and related proteases; Best Blastp hit = gi|7482068|pir||D69102 collagenase - Methanobacterium thermoautotrophicum (strain Delta H) gi|2622892|gb|AAB86229.1| (AE000931) collagenase [Methanothermobacter thermautotrophicus], score 365, E-value 1.00E-100.
       0.808
PheT
Best Blastp hit = gi|3123292|sp|P17922|SYFB_BACSU PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN (PHENYLALANINE--TRNA LIGASE BETA CHAIN) (PHERS) gi|7428487|pir||YFBSB phenylalanine--tRNA ligase (EC 6.1.1.20) beta chain - Bacillus subtilis gi|1770031|emb|CAA99564.1| (Z75208) phenylalanyl-tRNA synthetase beta subunit [Bacillus subtilis] gi|2635328|emb|CAB14823.1| (Z99118) phenylalanyl-tRNA synthetase (beta subunit) [Bacillus subtilis], score 591, E-value 1.00E-167.
       0.757
PheS
Best Blastp hit = gi|2507429|sp|P17921|SYFA_BACSU PHENYLALANYL-TRNA SYNTHETASE ALPHA CHAIN (PHENYLALANINE--TRNA LIGASE ALPHA CHAIN) (PHERS) gi|7428485|pir||YFBSA phenylalanine--tRNA ligase (EC 6.1.1.20) alpha chain - Bacillus subtilis gi|1770030|emb|CAA99603.1| (Z75208) phenylalany-tRNA synthetase beta subunit [Bacillus subtilis] gi|2635329|emb|CAB14824.1| (Z99118) phenylalanyl-tRNA synthetase (alpha subunit) [Bacillus subtilis], score 421, E-value 1.00E-117; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.731
FolK
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; Best Blastp hit = gi|10172707|dbj|BAB03814.1| (AP001507) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase [Bacillus halodurans], score 145, E-value 3.00E-34.
 
      0.698
TTE1683
Conserved hypothetical protein; Best Blastp hit = gi|11289287|pir||T44346 hypothetical protein [imported] - Clostridium histolyticum gi|3868864|dbj|BAA34252.1| (AB014075) Orf9u [Clostridium histolyticum], score 142, E-value 5.00E-33.
       0.697
DdlA2
D-alanine-D-alanine ligase and related ATP-grasp enzymes; Cell wall formation.
 
    0.653
RimL
Acetyltransferases, including N-acetylases of ribosomal proteins; Best Blastp hit = gi|10173452|dbj|BAB04556.1| (AP001510) BH0837; unknown conserved protein [Bacillus halodurans], score 181, E-value 8.00E-45.
 
  
 0.646
SpoU
rRNA methylase; Best Blastp hit = gi|10175734|dbj|BAB06831.1| (AP001517) rRNA methylase [Bacillus halodurans], score 144, E-value 2.00E-33; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.503
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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