STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE1773Small, acid-soluble spore proteins, alpha/be. (76 aa)    
Predicted Functional Partners:
Nth
Predicted EndoIII-related endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.773
TTE1770
Uncharacterized Fe-S protein; Best Blastp hit = gi|7451619|pir||E69820 conserved hypothetical protein yhbA - Bacillus subtilis gi|1903044|emb|CAB07527.1| (Z93102) hypothetical 48.5 kd protein [Bacillus subtilis] gi|2633214|emb|CAB12719.1| (Z99108) alternate gene name: ygaP; similar to hypothetical proteins [Bacillus subtilis], score 287, E-value 2.00E-76.
       0.773
LonB
Predicted ATP-dependent protease; Best Blastp hit = gi|7462861|pir||F72202 hypothetical protein TM1869 - Thermotoga maritima (strain MSB8) gi|4982454|gb|AAD36931.1|AE001823_13 '(AE001823) ATP-dependent protease LA, putative [Thermotoga maritima]', score 649, E-value 0.
       0.773
TTE1772
Hypothetical protein.
       0.773
TTE0121
Hypothetical protein.
  
     0.630
Fer
Best Blastp hit = gi|119994|sp|P00203|FER_MOOTH FERREDOXIN gi|65704|pir||FECLC ferredoxin [4Fe-4S] - Clostridium thermaceticum, score 97.1, E-value 4.00E-20.
       0.570
TTE0945
Hypothetical protein.
  
    0.563
TTE1768
Conserved hypothetical protein; Best Blastp hit = gi|7475212|pir||C69897 hypothetical protein yoaR - Bacillus subtilis gi|2619029|gb|AAB84453.1| (AF027868) YoaR [Bacillus subtilis] gi|2634265|emb|CAB13764.1| (Z99114) yoaR [Bacillus subtilis], score 148, E-value 2.00E-34.
       0.548
TTE1490
Best Blastp hit = gi|1173363|sp|P41371|SAS0_CLOPE 'SMALL, ACID-SOLUBLE SPORE PROTEIN 1 (SSP-1)' gi|625340|pir||A54537 small acid-soluble spore ssp1 - Clostridium perfringens gi|40629|emb|CAA42081.1| (X59480) small acid-soluble protein [Clostridium perfringens], score 58.9, E-value 8.00E-09.
  
   
 0.497
TTE1489
Best Blastp hit = gi|134226|sp|P22065|SAS1_CLOBI 'SMALL, ACID-SOLUBLE SPORE PROTEIN ALPHA (SASP) (ASSP)' gi|482685|pir||A61028 small acid-soluble spore protein alpha - Clostridium bifermentans gi|226891|prf||1610173A small acid soluble protein alpha [Clostridium bifermentans], score 58.2, E-value 1.00E-08.
  
   
 0.485
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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