STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE2143Conserved hypothetical protein; Best Blastp hit = gi|7470590|pir||S75439 hypothetical protein slr2105 - Synechocystis sp. (strain PCC 6803) gi|1653084|dbj|BAA18000.1| (D90911) hypothetical protein [Synechocystis sp.], score 144, E-value 3.00E-33. (462 aa)    
Predicted Functional Partners:
NosY2
ABC-type transport system involved in multi-copper enzyme maturation, permease component; Best Blastp hit = gi|11351683|pir||B83188 probable permease of ABC transporter PA3671 [imported] - Pseudomonas aeruginosa (strain PAO1) gi|9949833|gb|AAG07059.1|AE004786_11 (AE004786) probable permease of ABC transporter [Pseudomonas aeruginosa], score 96.3, E-value 3.00E-19.
  
 0.996
TTE2142
Hypothetical protein.
 
     0.962
CcmA11
ABC-type multidrug transport system, ATPase component; Best Blastp hit = gi|7445598|pir||S76626 ABC-type transport protein sll0489 - Synechocystis sp. (strain PCC 6803) gi|1001733|dbj|BAA10570.1| (D64004) ABC transporter [Synechocystis sp.], score 289, E-value 3.00E-77.
 
  
 0.957
TTE2146
Best Blastp hit = gi|7465464|pir||T31419 cyclic beta 1-2 glucan synthetase - Brucella abortus gi|3551791|gb|AAC34747.1| (AF047823) cyclic beta 1-2 glucan synthetase [Brucella melitensis biovar Abortus], score 1094, E-value 0.
       0.489
mprF
Predicted integral membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
  
     0.455
MviM5
Predicted dehydrogenases and related proteins; Best Blastp hit = gi|10173324|dbj|BAB04429.1| (AP001509) BH0710; unknown conserved protein [Bacillus halodurans], score 139, E-value 8.00E-32.
 
     0.447
TTE0483
Conserved hypothetical protein; Best Blastp hit = gi|7463333|pir||B70163 hypothetical protein BB0507 - Lyme disease spirochete gi|2688430|gb|AAC66880.1| (AE001153) B. burgdorferi predicted coding region BB0507 [Borrelia burgdorferi], score 54.7, E-value 3.00E-06.
  
     0.408
TolB
Periplasmic component of the Tol biopolymer transport system; Best Blastp hit = gi|12721292|gb|AAK03051.1| (AE006136) TolB [Pasteurella multocida], score 60.1, E-value 8.00E-08.
  
     0.403
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.