STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
buk1Butyrate kinase; Best Blastp hit = gi|2127293|pir||I40819 butyrate kinase - Clostridium acetobutylicum gi|457634|gb|AAA75487.1| (L14744) butyrate kinase [Clostridium acetobutylicum], score 416, E-value 1.00E-115; Belongs to the acetokinase family. (357 aa)    
Predicted Functional Partners:
Pta3
Phosphotransacetylase; Best Blastp hit = gi|730419|sp|Q05624|PTB_CLOAB PHOSPHATE BUTYRYLTRANSFERASE (PHOSPHOTRANSBUTYRYLASE) gi|484479|pir||JN0794 phosphate butyryltransferase (EC 2.3.1.19) - Clostridium acetobutylicum (strain NCIMB 8052) gi|144892|gb|AAA52080.1| (L04468) phosphotransbutyrylase [Clostridium acetobutylicum], score 318, E-value 7.00E-86.
 
 0.998
Pta2
Phosphotransacetylase; Best Blastp hit = gi|7959053|dbj|BAA95934.1| (AB035092) phosphotransbutyrylase [Clostridium perfringens], score 258, E-value 8.00E-68.
  
 0.957
buk2
Butyrate kinase; Best Blastp hit = gi|6685235|sp|Q9ZNE5|BUK_CLOPE BUTYRATE KINASE (BK) gi|4239872|dbj|BAA74725.1| (AB016775) butyrate kinase [Clostridium perfringens] gi|7959054|dbj|BAA95935.1| (AB035092) butyrate kinase [Clostridium perfringens], score 389, E-value 1.00E-107; Belongs to the acetokinase family.
 
  
 
0.948
AtoD
Acyl-CoA:acetate CoA transferase alpha subunit; Best Blastp hit = gi|5880875|gb|AAD54947.1|AF157306_2 (AF157306) acetoacetate:butyrate/acetate coenzyme A transferase [Clostridium beijerinckii], score 307, E-value 7.00E-83.
     
 0.932
AtoA
Acyl-CoA:acetate CoA transferase beta subunit; Best Blastp hit = gi|5880876|gb|AAD54948.1|AF157306_3 (AF157306) acetoacetate:butyrate/acetate coenzyme A transferase [Clostridium beijerinckii], score 310, E-value 1.00E-83.
     
 0.909
TTE2200
Conserved hypothetical protein; Best Blastp hit = gi|7462621|pir||F72214 hypothetical protein - Thermotoga maritima (strain MSB8) gi|4982336|gb|AAD36822.1|AE001814_4 (AE001814) hypothetical protein [Thermotoga maritima], score 160, E-value 2.00E-38.
       0.808
TTE2199
Ferredoxin 3; Best Blastp hit = gi|7462853|pir||G72214 hypothetical protein TM1758 - Thermotoga maritima (strain MSB8) gi|4982337|gb|AAD36823.1|AE001814_5 '(AE001814) 2-oxoisovalerate oxidoreductase, gamma subunit, putative [Thermotoga maritima]', score 76.6, E-value 4.00E-14.
       0.789
GdhA3
Glutamate dehydrogenase/leucine dehydrogenase; Best Blastp hit = gi|9087160|sp|Q59194|DHLE_BACCE LEUCINE DEHYDROGENASE (LEUDH) gi|1256412|gb|AAA96314.1| (U51099) leucine dehydrogenase LeuDH [Bacillus cereus], score 482, E-value 1.00E-135; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.788
GdhA4
Glutamate dehydrogenase/leucine dehydrogenase; Best Blastp hit = gi|80215|pir||A31950 leucine dehydrogenase (EC 1.4.1.9) - Bacillus stearothermophilus gi|143146|gb|AAA22570.1| (M22977) leucine dehydrogenase (EC 1.4.1.9) [Bacillus stearothermophilus], score 462, E-value 1.00E-129.
  
  
 0.760
PorA6
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; Best Blastp hit = gi|7433688|pir||H72214 hypothetical protein TM1759 - Thermotoga maritima (strain MSB8) gi|4982338|gb|AAD36824.1|AE001814_6 '(AE001814) 2-oxoisovalerate oxidoreductase, beta subunit, putative [Thermotoga maritima]', score 419, E-value 1.00E-116.
     
 0.756
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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