STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AccA2Acetyl-CoA carboxylase alpha subunit; Best Blastp hit = gi|1364105|pir||A49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) alpha chain - Veillonella parvula gi|415593|gb|AAC36820.1| (L22208) methylmalonyl-CoA decarboxylase alpha-subunit [Veillonella parvula] gi|415915|emb|CAA80872.1| '(Z24754) alpha-subunit,methylmalonyl-CoA decarboxylase [Veillonella parvula]', score 705, E-value 0. (516 aa)    
Predicted Functional Partners:
AccB2
Biotin carboxyl carrier protein; Best Blastp hit = gi|11277203|pir||T44984 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) gamma chain [imported] - Propionigenium modestum gi|2706400|emb|CAA05139.1| '(AJ002015) methylmalonyl-CoA decarboxylase, gamma-subunit [Propionigenium modestum]', score 99, E-value 2.00E-20.
 
 0.993
AccB
Biotin carboxyl carrier protein; Best Blastp hit = gi|3777506|gb|AAC69172.1| (AF030576) glutaconyl-CoA decarboxylase gamma subunit [Acidaminococcus fermentans], score 98.6, E-value 3.00E-20.
 
 0.973
GloA3
Lactoylglutathione lyase and related lyases; Best Blastp hit = gi|14010616|gb|AAK52053.1|AF364548_1 (AF364548) methylmalonyl-CoA epimerase [Pyrococcus horikoshii], score 167, E-value 7.00E-41.
  
 
 0.884
BirA
Biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
 
 0.867
TTE2384
Hypothetical protein.
     
 0.793
GloA2
Lactoylglutathione lyase and related lyases; Best Blastp hit = gi|14010616|gb|AAK52053.1|AF364548_1 (AF364548) methylmalonyl-CoA epimerase [Pyrococcus horikoshii], score 181, E-value 3.00E-45.
  
 
 0.749
CaiA
Acyl-CoA dehydrogenases; Best Blastp hit = gi|11252723|pir||T45286 butyryl-CoA dehydrogenase (EC 1.3.99.2) [imported] - Clostridium thermosaccharolyticum gi|1903328|emb|CAB07496.1| (Z92974) butyryl-CoA dehydrogenase [Thermoanaerobacterium thermosaccharolyticum], score 601, E-value 1.00E-171.
 
  
 0.641
ArgK
Putative periplasmic protein kinase ArgK and related GTPases of G3E family; Best Blastp hit = gi|7519922|pir||F75215 lysine arginine ornithine transport system kinase PAB2398 - Pyrococcus abyssi (strain Orsay) gi|5457682|emb|CAB49173.1| (AJ248283) Lysine Arginine Ornithine TRANSPORT SYSTEM KINASE [Pyrococcus abyssi], score 353, E-value 1.00E-96.
     
 0.637
Sbm4
Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); Best Blastp hit = gi|6137077|emb|CAB59633.1| '(AJ246005) isobutyryl-CoA mutase, small subunit [Streptomyces cinnamonensis]', score 195, E-value 2.00E-49.
  
  
 0.626
Sbm5
Methylmalonyl-CoA mutase, N-terminal domain/subunit; Best Blastp hit = gi|7519968|pir||C75130 methylmalonyl-CoA mutase (EC 5.4.99.2) chain A [similarity] - Pyrococcus abyssi (strain Orsay) gi|5458267|emb|CAB49756.1| '(AJ248285) methylmalonyl-CoA mutase, subunit alpha, N-terminus (mcmA1) [Pyrococcus abyssi]', score 762, E-value 0.
  
  
 0.619
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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