STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTE2404Conserved hypothetical protein; Best Blastp hit = gi|11499402|ref|NP_070641.1| hypothetical protein [Archaeoglobus fulgidus] gi|7430065|pir||E69476 hypothetical protein AF1814 - Archaeoglobus fulgidus gi|2648735|gb|AAB89439.1| (AE000977) A. fulgidus predicted coding region AF1814 [Archaeoglobus fulgidus], score 90.5, E-value 9.00E-18. (134 aa)    
Predicted Functional Partners:
BioY
Uncharacterized ACR; Best Blastp hit = gi|7474464|pir||B69832 biotin biosynthesis homolog yhfU - Bacillus subtilis gi|2226257|emb|CAA74544.1| (Y14084) hypothetical protein [Bacillus subtilis] gi|2633373|emb|CAB12877.1| (Z99109) similar to biotin biosynthesis [Bacillus subtilis], score 135, E-value 4.00E-31.
 
    0.679
Tdh3
Threonine dehydrogenase and related Zn-dependent dehydrogenases; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
       0.532
BioF
7-keto-8-aminopelargonate synthetase and related enzymes; Best Blastp hit = gi|13541229|ref|NP_110917.1| Glycine C-acetyltransferase [Thermoplasma volcanium], score 249, E-value 5.00E-65.
       0.532
SpoIID
Sporulation protein and related proteins; Best Blastp hit = gi|282468|pir||S27530 sporulation protein - Clostridium acetobutylicum gi|144915|gb|AAA23281.1| (M87835) sporulation protein [Clostridium acetobutylicum], score 226, E-value 3.00E-58.
  
    0.447
BirA
Biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.403
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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