STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UgpB6Sugar-binding periplasmic proteins/domains; Best Blastp hit = gi|3915566|sp|O32156|YURO_BACSU HYPOTHETICAL ABC TRANSPORTER EXTRACELLULAR BINDING PROTEIN YURO PRECURSOR gi|7475641|pir||F70018 multiple sugar-binding protein homolog yurO - Bacillus subtilis gi|2635757|emb|CAB15250.1| (Z99120) similar to multiple sugar-binding protein [Bacillus subtilis], score 105, E-value 2.00E-21. (435 aa)    
Predicted Functional Partners:
MalG6
Sugar permeases; Best Blastp hit = gi|7481610|pir||T35672 probable transmembrane transport protein - Streptomyces coelicolor gi|2661679|emb|CAA15784.1| (AL009199) probable transmembrane transport protein [Streptomyces coelicolor A3(2)], score 187, E-value 2.00E-46.
 
 
 0.962
MalF6
ABC-type sugar transport systems, permease components; Best Blastp hit = gi|3915506|sp|O58968|YC15_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN PH1215 gi|7442715|pir||A71065 probable sugar-binding transport system permease protein - Pyrococcus horikoshii gi|3257632|dbj|BAA30315.1| (AP000005) 292aa long hypothetical sugar-binding transport system permease protein [Pyrococcus horikoshii], score 195, E-value 6.00E-49.
 
 
 0.956
MalG4
Sugar permeases; Best Blastp hit = gi|7442826|pir||F72379 'sugar ABC transporter, permease protein - Thermotoga maritima (strain MSB8)' gi|4980936|gb|AAD35515.1|AE001721_14 '(AE001721) sugar ABC transporter, permease protein [Thermotoga maritima]', score 221, E-value 7.00E-57.
 
 
 0.912
MalG
Sugar permeases; Best Blastp hit = gi|10176312|dbj|BAB07407.1| (AP001519) sugar transport system (permease) [Bacillus halodurans], score 289, E-value 3.00E-77.
 
 
 0.910
MalG5
Sugar permeases; Best Blastp hit = gi|10176306|dbj|BAB07401.1| (AP001519) sugar ABC transporter (permease) [Bacillus halodurans], score 228, E-value 6.00E-59.
 
 
 0.904
MalF
Best Blastp hit = gi|10176313|dbj|BAB07408.1| (AP001519) sugar transport system (permease) [Bacillus halodurans], score 239, E-value 5.00E-62.
 
 
 0.895
MalF5
ABC-type sugar transport systems, permease components; Best Blastp hit = gi|3915506|sp|O58968|YC15_PYRHO HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN PH1215 gi|7442715|pir||A71065 probable sugar-binding transport system permease protein - Pyrococcus horikoshii gi|3257632|dbj|BAA30315.1| (AP000005) 292aa long hypothetical sugar-binding transport system permease protein [Pyrococcus horikoshii], score 145, E-value 7.00E-34.
 
 
 0.892
MalF4
ABC-type sugar transport systems, permease components; Best Blastp hit = gi|7442700|pir||S77536 lactose transport system permease protein lacF - Synechocystis sp. (strain PCC 6803) gi|1652461|dbj|BAA17383.1| (D90905) lactose transport system permease protein LacF [Synechocystis sp.], score 184, E-value 1.00E-45.
 
 
 0.885
MalK
ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component; Best Blastp hit = gi|7959056|dbj|BAA95937.1| (AB035092) Orf5 [Clostridium perfringens], score 499, E-value 1.00E-140; Belongs to the ABC transporter superfamily.
 
 
 0.831
MalG2
Sugar permeases; Best Blastp hit = gi|13814186|gb|AAK41272.1| (AE006719) Sugar ABC transporter [Sulfolobus solfataricus], score 177, E-value 1.00E-43.
 
 
 0.823
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.