Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TTE2425Conserved hypothetical protein; Best Blastp hit = gi|14089668|emb|CAC13428.1| (AL445563) conserved hypothetical protein [Mycoplasma pulmonis], score 58.5, E-value 5.00E-08. (162 aa)    
Predicted Functional Partners:
TTE1254
Conserved hypothetical protein; Best Blastp hit = gi|13621929|gb|AAK33694.1| (AE006527) conserved hypothetical protein [Streptococcus pyogenes], score 59.7, E-value 2.00E-08.
  
     0.529
TTE2423
Hypothetical protein.
       0.450
AmiC2
N-acetylmuramoyl-L-alanine amidase; Best Blastp hit = gi|6969396|gb|AAF33754.1|AF216288_1 (AF216288) putative N-acetylmuramoyl-L-alanine amidase [Nostoc sp. PCC 7120], score 132, E-value 5.00E-30.
       0.450
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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