STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ta0566Conserved hypothetical protein; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (91 aa)    
Predicted Functional Partners:
Ta0589
Strong similarity to known protein: ssu ribosomal protein s17e (rps17e) PAB7207 - Pyrococcus abyssi (strain Orsay); PIR:F75128; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.999
Ta1114
Probable 50S ribosomal protein L24E; Binds to the 23S rRNA.
   
   0.999
Ta1261
Probable 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.999
Ta1265
Probable 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
   0.999
Ta1286
Known protein: ribosomal protein L15.eR - Thermoplasma acidophilum; PIR:JC4150; Belongs to the eukaryotic ribosomal protein eL15 family.
   
   0.999
Ta1297
Strong similarity to known protein: ribosomal protein L21.eR [validated] - Haloarcula marismortui; PIR1:R5HS31; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 
 0.999
Ta0444
Probable translation elongation factor aEF-1, alpha chain; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
   
 0.998
Ta1262
Probable ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.995
Ta0567
Strong similarity to unknown protein: hypothetical protein AF0573 - Archaeoglobus fulgidus; PIR:E69321.
  
  
 0.991
Ta1092
Similarity to known protein: ribosomal protein S24.e, cytosolic - yeast (Saccharomyces cerevisiae); PIR:S48410; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.991
Your Current Organism:
Thermoplasma acidophilum
NCBI taxonomy Id: 273075
Other names: T. acidophilum DSM 1728, Thermoplasma acidophilum DSM 1728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.