Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ta0036 | Ta0097 | gene:9571252 | gene:9571312 | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.567 |
| Ta0036 | Ta0600 | gene:9571252 | gene:9571819 | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | 0.404 |
| Ta0036 | Ta0912 | gene:9571252 | gene:9572127 | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | Probable DNA binding protein (Ssh10b related); Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. | 0.470 |
| Ta0036 | Ta1299 | gene:9571252 | gene:9572522 | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | Strong similarity to unknown protein: hypothetical protein PH1822 - Pyrococcus horikoshii; PIR:F71193. | 0.646 |
| Ta0036 | Ta1441 | gene:9571252 | gene:9572670 | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | Conserved hypothetical protein; Similarity to unknown protein: probable 3-isopropylmalate dehydratase - Archaeoglobus fulgidus; PIR:B69406. | 0.423 |
| Ta0042 | Ta0912 | gene:9571258 | gene:9572127 | Similarity to unknown protein: hypothetical protein MJ1150 - Methanococcus jannaschii; PIR:E64443; Belongs to the UPF0215 family. | Probable DNA binding protein (Ssh10b related); Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. | 0.568 |
| Ta0097 | Ta0036 | gene:9571312 | gene:9571252 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | 0.567 |
| Ta0097 | Ta0600 | gene:9571312 | gene:9571819 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | 0.555 |
| Ta0097 | Ta0912 | gene:9571312 | gene:9572127 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Probable DNA binding protein (Ssh10b related); Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. | 0.503 |
| Ta0097 | Ta1035 | gene:9571312 | gene:9572256 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | DNA repair protein RAD2 related protein; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision rep [...] | 0.638 |
| Ta0097 | Ta1299 | gene:9571312 | gene:9572522 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Strong similarity to unknown protein: hypothetical protein PH1822 - Pyrococcus horikoshii; PIR:F71193. | 0.697 |
| Ta0097 | Ta1380 | gene:9571312 | gene:9572607 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Conserved hypothetical protein; Involved in DNA damage repair. | 0.536 |
| Ta0097 | Ta1441 | gene:9571312 | gene:9572670 | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | Conserved hypothetical protein; Similarity to unknown protein: probable 3-isopropylmalate dehydratase - Archaeoglobus fulgidus; PIR:B69406. | 0.619 |
| Ta0600 | Ta0036 | gene:9571819 | gene:9571252 | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | 0.404 |
| Ta0600 | Ta0097 | gene:9571819 | gene:9571312 | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. | 0.555 |
| Ta0600 | Ta0912 | gene:9571819 | gene:9572127 | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | Probable DNA binding protein (Ssh10b related); Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. | 0.589 |
| Ta0600 | Ta1247 | gene:9571819 | gene:9572470 | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | Probable adenylate kinase; Strong similarity to known protein: ADENYLATE KINASE (EC 2.7.4.3) (ATP-AMP TRANSPHOSPHORYLASE) - Methanococcus igneus; SWISSPROT:KAD_METIG; Belongs to the archaeal adenylate kinase family. | 0.437 |
| Ta0600 | Ta1299 | gene:9571819 | gene:9572522 | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | Strong similarity to unknown protein: hypothetical protein PH1822 - Pyrococcus horikoshii; PIR:F71193. | 0.596 |
| Ta0600 | Ta1441 | gene:9571819 | gene:9572670 | Similarity to unknown protein: conserved hypothetical protein MTH1407 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69054; Belongs to the UPF0147 family. | Conserved hypothetical protein; Similarity to unknown protein: probable 3-isopropylmalate dehydratase - Archaeoglobus fulgidus; PIR:B69406. | 0.525 |
| Ta0912 | Ta0036 | gene:9572127 | gene:9571252 | Probable DNA binding protein (Ssh10b related); Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. | DNA polymerase II (DP1), subunit 2 related protein; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). | 0.470 |
page 1 of 3