STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ta1093Strong similarity to known protein: ribosomal protein S27a.eR [similarity] - Haloarcula marismortui; PIR:S27036; Belongs to the eukaryotic ribosomal protein eS31 family. (55 aa)    
Predicted Functional Partners:
Ta1092
Similarity to known protein: ribosomal protein S24.e, cytosolic - yeast (Saccharomyces cerevisiae); PIR:S48410; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.994
Ta1090
Conserved hypothetical protein; Stimulates transcription elongation; Belongs to the archaeal Spt4 family.
  
    0.982
Ta1089
Similarity to known protein: DNA-directed RNA polymerase (EC 2.7.7.6) chain E [validated] - Sulfolobus acidocaldarius; PIR:S38658.
 
  
 0.972
Ta1091
Conserved hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).
 
  
 0.964
Ta1265
Probable 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
   0.886
Ta0323
Similarity to known protein: ribosomal protein S6.1, cytosolic - maize; PIR2:T04334; Belongs to the eukaryotic ribosomal protein eS6 family.
  
   0.882
Ta1204
Similarity to known protein: Chlamydomonas sp. mRNA for ribosomal protein S27, NaCl inducible, completecds, clone:NaEX96-53.gene: RS27; product: ribosomal protein S27; Chlamydomonas sp. HS-5 mRNA for ribosomal protein S27, NaCl inducible, complete cds, clone:NaEX96-53; TREMBL:AU066514_1ORF_prediction: This ORF may be 22 aa longer starting with MSQSNYST... Whereas the frequency of rare codons would support this earlier start or the reading frame, codon usage is rather moderate in this hypothetical ORF region. Since the related forms of related archaebacterial proteins are shorter as wel [...]
  
   0.871
Ta0589
Strong similarity to known protein: ssu ribosomal protein s17e (rps17e) PAB7207 - Pyrococcus abyssi (strain Orsay); PIR:F75128; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.865
Ta1271
50S ribosomal protein L3 related protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
   0.863
Ta0566
Conserved hypothetical protein; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
   
    0.860
Your Current Organism:
Thermoplasma acidophilum
NCBI taxonomy Id: 273075
Other names: T. acidophilum DSM 1728, Thermoplasma acidophilum DSM 1728
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.