Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ta0186 | Ta0375 | gene:9571401 | gene:9571594 | Hypothetical membrane protein; Weak similarity to known protein. Relation: weak similarity to bicyclomycin resistance protein, E. coli, SWISSPROT:BCR_ECOLI. | Similarity to known protein: PROTEASE SYNTHASE AND SPORULATION NEGATIVE REGULATORY PROTEIN PAI 1 - Bacillus subtilis; SWISSPROT:PAIA_BACSU. | 0.402 |
Ta0186 | Ta0685 | gene:9571401 | gene:9571905 | Hypothetical membrane protein; Weak similarity to known protein. Relation: weak similarity to bicyclomycin resistance protein, E. coli, SWISSPROT:BCR_ECOLI. | Weak similarity to known protein. | 0.683 |
Ta0375 | Ta0186 | gene:9571594 | gene:9571401 | Similarity to known protein: PROTEASE SYNTHASE AND SPORULATION NEGATIVE REGULATORY PROTEIN PAI 1 - Bacillus subtilis; SWISSPROT:PAIA_BACSU. | Hypothetical membrane protein; Weak similarity to known protein. Relation: weak similarity to bicyclomycin resistance protein, E. coli, SWISSPROT:BCR_ECOLI. | 0.402 |
Ta0375 | Ta0685 | gene:9571594 | gene:9571905 | Similarity to known protein: PROTEASE SYNTHASE AND SPORULATION NEGATIVE REGULATORY PROTEIN PAI 1 - Bacillus subtilis; SWISSPROT:PAIA_BACSU. | Weak similarity to known protein. | 0.409 |
Ta0685 | Ta0186 | gene:9571905 | gene:9571401 | Weak similarity to known protein. | Hypothetical membrane protein; Weak similarity to known protein. Relation: weak similarity to bicyclomycin resistance protein, E. coli, SWISSPROT:BCR_ECOLI. | 0.683 |
Ta0685 | Ta0375 | gene:9571905 | gene:9571594 | Weak similarity to known protein. | Similarity to known protein: PROTEASE SYNTHASE AND SPORULATION NEGATIVE REGULATORY PROTEIN PAI 1 - Bacillus subtilis; SWISSPROT:PAIA_BACSU. | 0.409 |