STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ta0620Similarity to known protein: aromatic amino acid transport protein aroP - Escherichia coli; PIR:QRECAA. (531 aa)    
Predicted Functional Partners:
Ta0138
Similarity to known protein: neopullulanase (EC 3.2.1.135) - Bacillus sp; PIR:JS0673.
  
 0.711
Ta0877
Similarity to known protein: amino acid transporter homolog yhdG - Bacillus subtilis; PIR:E69825.
 
     0.591
Ta1279
Conserved hypothetical membrane protein.
 
     0.552
Ta0645
Amino acid permease related protein; Similarity to known protein: S.typhimurium ORF's 32 & 48 & gene pykF; TREMBL:STPYKFORF_2.
 
     0.496
Ta0671
Hypothetical protein; No similarity. Relation: weak similarity to amino acid transporter homolog ybeC - Bacillus subtilis, PIR:D69748.
  
     0.491
Ta0488
Weak similarity to unknown protein. Relation: similarity to protein kinases.
  
 
 0.490
Ta0853
Similarity to known protein: Rhodococcus erythropolis ORF1, ethanolamine permease (eutP), ethanolamineammonia-lyase large subunit (eutB), ethanolamine ammonia-lyase smallsubunit (eutC) genes, complete cds and ORF2 gene, partial cds; TREMBL:RSEUTPBC_2.
  
     0.488
Ta0661
Weak similarity to known protein. Relation: weak similarity to putative amino acid permease - Streptomyces coelicolor, TREMBLNEW:SCI30A_4 (cosmid sequencing).
 
     0.482
Ta0619
Probable 2-keto-3-deoxy gluconate aldolase; Strong similarity to known protein: Sulfolobus solfataricus gene encoding 2-keto-3-deoxy gluconate aldolase; TREMBL:SSO224174_1. Relation: shows also similarity to dihydrodipicolinate synthase (EC 4.2.1.52) dapA - Bacillus subtilis, PIR:E46665.
     
 0.469
Ta1161
Similarity to known protein: HIGH-AFFINITY CATIONIC AMINO ACID TRANSPORTER-1 (CAT-1) (CAT1) (SYSTEMY+ BASIC AMINO ACID TRANSPORTER) (ECOTROPIC RETROVIRAL LEUKEMIARECEPTOR) (ERR) (ECOTROPIC RETROVIRUS RECEPTOR) - Rattus norvegicus (Rat); SWISSPROT:CTR1_RAT.
  
     0.455
Your Current Organism:
Thermoplasma acidophilum
NCBI taxonomy Id: 273075
Other names: T. acidophilum DSM 1728, Thermoplasma acidophilum DSM 1728
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