STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ta0725Weak similarity to known protein. (82 aa)    
Predicted Functional Partners:
Ta1001
Probable fumarate reductase (frdA); Strong similarity to known protein: S.acidocaldarius sdhA, sdhB, sdhC and sdhD genes; TREMBL:SASDHABCD_2.
  
 
 0.819
Ta0211
FIXA (related to carnitine metabolism) related protein; Similarity to known protein: FIXA PROTEIN.FIXA PROTEIN - Escherichia coli.Escherichia coli; SWISSPROT:FIXA_ECOLI.
   
 
 0.674
Ta0328
FIXA (related to carnitine metabolism) related protein; Similarity to known protein: FIXA PROTEIN.FIXA PROTEIN - Escherichia coli.Escherichia coli; SWISSPROT:FIXA_ECOLI.
   
 
 0.674
Ta1003
Known protein: probable cytochrome b, diheme - Thermoplasma acidophilum; PIR:S34620.
  
  
 0.610
Ta1013
Similarity to known protein: INDOLEPYRUVATE OXIDOREDUCTASE SUBUNIT IORB (EC 1.-.-.-) (IOR)(INDOLEPYRUVATE FERREDOXIN OXIDOREDUCTASE BETA SUBUNIT) - Pyrococcus kodakaraensis; SWISSPROT:IORB_PYRKOFunction: Catalyzes the oxidative decarboxylation of aryl pyruvates, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
  
  
 0.568
Ta1233
Weak similarity to unknown protein.
  
 
 0.504
Ta1234
Hypothetical membrane protein.
  
 
 0.504
Ta0013
Probable Fe-superoxide dismutase (sod); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.461
Ta0726
Hypothetical membrane protein.
       0.461
Ta0724
Similarity to unknown protein: hypothetical protein PH0691 - Pyrococcus horikoshii; PIR:D71115.
       0.435
Your Current Organism:
Thermoplasma acidophilum
NCBI taxonomy Id: 273075
Other names: T. acidophilum DSM 1728, Thermoplasma acidophilum DSM 1728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.