STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ta0948Similarity to unknown protein: conserved hypothetical protein MTH729 - Methanobacterium thermoautotrophicum (strain Delta H); PIR:D69197. Relation: ethylene-responsive transcriptional coactivator related protein conserved hypothetical protein TREMBLNEW:AF096246_1. (141 aa)    
Predicted Functional Partners:
Ta1265
Probable 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
 
 
 0.999
Ta1167
Similarity to known protein: ribosomal protein S0.e.B, cytosolic - yeast (Saccharomyces cerevisiae); PIR:S14051; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.966
Ta1251
Probable 30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
 
   0.952
Ta1267
Probable 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
   0.947
Ta0434
Strong similarity to known protein: 50S RIBOSOMAL PROTEIN L18E (HL29) (L19) - Haloarcula marismortui (Halobacterium marismortui); SWISSPROT:R18E_HALMA; Belongs to the eukaryotic ribosomal protein eL18 family.
 
   0.937
Ta1032
Probable 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
   0.928
Ta1257
Probable 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
 
   0.921
Ta1297
Strong similarity to known protein: ribosomal protein L21.eR [validated] - Haloarcula marismortui; PIR1:R5HS31; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.919
Ta0445
Probable 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.909
Ta1092
Similarity to known protein: ribosomal protein S24.e, cytosolic - yeast (Saccharomyces cerevisiae); PIR:S48410; Belongs to the eukaryotic ribosomal protein eS24 family.
    
 
 0.897
Your Current Organism:
Thermoplasma acidophilum
NCBI taxonomy Id: 273075
Other names: T. acidophilum DSM 1728, Thermoplasma acidophilum DSM 1728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.