STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ta1467Similarity to unknown protein: hypothetical protein APE1043 - Aeropyrum pernix (strain K1); PIR:D72703. (393 aa)    
Predicted Functional Partners:
Ta1129
Sulfide-quinone reductase related protein; Similarity to known protein: Rhodobacter capsulatus Rbsc-2 and sqr genes, ORF2 and ORF4 DNA; TREMBL:RCSQR_3Function: Deletion and interruption strains of Rhodobacter capsulatus document that sulfide-quinone reductase is essential for photoautotrophic growth on sulfide. The sulfide-oxidizing enzyme is involved in energy conversion, not in detoxification.
  
  
 
0.924
Ta0535
Similarity to known protein: cysteine synthase (EC 4.2.99.8) B - Campylobacter jejuni; PIR:JC6185.
    
 0.915
Ta1413
Similarity to known protein: Schizosaccharomyces pombe sulfide dehydrogenase (hmt2) gene, complete cds; TREMBL:AF042283_1.
  
  
 
0.915
Ta0531
Probable cystathionine gamma-synthase; Strong similarity to known protein: Arabidopsis thaliana gene for cystathionine gamma-synthase, complete cds; TREMBL:AB010888_1Function: Involved in Cysteine metabolism, Methionine metabolism, Glycine, serine and threonine metabolism, Selenoamino acid metabolism. EC Numbers and enzyme names are mixed up, homologs are called cystathionine gamma-synthase (EC 4.2.99.9) and cystathionine gamma lyase (EC 4.4.1.-).
  
 
 0.913
Ta1468
Hypothetical protein.
       0.773
Ta0577
Sarcosine oxidase related protein; Weak similarity to known proteinFunction: Glycine, serine and threonine metabolism.
  
 
 0.745
Ta1466
Strong similarity to unknown protein: hypothetical protein PAB0577 - Pyrococcus abyssi (strain Orsay); PIR:F75132.
  
    0.576
Ta0140
Conserved hypothetical protein; Weak similarity to known protein. Relation: weak similarity to CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT, Chlorobium limicola, SWISSPROT:UCRI_CHLLT; Belongs to the SDX family.
  
 
 0.560
Ta0428
Similarity to known protein: biphenyl dioxygenase (EC 1.14.12.-) Rieske iron-sulfur component - Pseudomonas sp; PIR:E41858.
  
 
 0.560
Ta0884
Ferredoxin related protein; Similarity to known protein: NAPHTHALENE 1, 2-DIOXYGENASE SYSTEM FERREDOXIN COMPONENT - Pseudomonas putida, and Pseudomonas sp. (strain C18); SWISSPROT:NDOA_PSEPU.
  
 
 0.560
Your Current Organism:
Thermoplasma acidophilum
NCBI taxonomy Id: 273075
Other names: T. acidophilum DSM 1728, Thermoplasma acidophilum DSM 1728
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