STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TVG1282914tRNA synthetase Lys; Belongs to the class-I aminoacyl-tRNA synthetase family. (503 aa)    
Predicted Functional Partners:
TVG1281244
Orotate phosphoribosyl transferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.877
TVG1284612
tRNA synthetase Met; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.
 
   
 0.754
TVG1280493
Histidine triad protein [HIT].
       0.729
TVG1517588
Transcription termination-antitermination factor [nusG]; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
    0.701
TVG1042450
tRNA synthetase Tyr; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.
   
  
 0.493
TVG1187063
Ribosomal protein large subunit L18; Belongs to the eukaryotic ribosomal protein eL18 family.
  
    0.463
TVG0550709
Ribosomal protein small subunit S9; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.419
TVG0551085
Ribosomal protein small subunit S14; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
    0.406
Your Current Organism:
Thermoplasma volcanium
NCBI taxonomy Id: 273116
Other names: T. volcanium GSS1, Thermoplasma volcanium GSS1, Thermoplasma volcanium str. GSS1, Thermoplasma volcanium strain GSS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.