Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
UU417 | UU419 | UU417 | UU419 | Conserved hypothetical. | Conserved hypothetical. | 0.823 |
UU417 | UU420 | UU417 | UU420 | Conserved hypothetical. | Conserved hypothetical. | 0.521 |
UU417 | dnaE | UU417 | UU415 | Conserved hypothetical. | DNA polymerase III alpha chain 2; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | 0.619 |
UU417 | hrcA | UU417 | UU421 | Conserved hypothetical. | Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. | 0.553 |
UU417 | polA | UU417 | UU414 | Conserved hypothetical. | DNA polymerase I: 5'-3' exonuclease domain protein; 5'-3' exonuclease acting preferentially on double-stranded DNA. | 0.597 |
UU417 | thiI | UU417 | UU418 | Conserved hypothetical. | Thiamin biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.791 |
UU419 | UU417 | UU419 | UU417 | Conserved hypothetical. | Conserved hypothetical. | 0.823 |
UU419 | UU420 | UU419 | UU420 | Conserved hypothetical. | Conserved hypothetical. | 0.546 |
UU419 | dnaE | UU419 | UU415 | Conserved hypothetical. | DNA polymerase III alpha chain 2; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | 0.526 |
UU419 | hrcA | UU419 | UU421 | Conserved hypothetical. | Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. | 0.608 |
UU419 | polA | UU419 | UU414 | Conserved hypothetical. | DNA polymerase I: 5'-3' exonuclease domain protein; 5'-3' exonuclease acting preferentially on double-stranded DNA. | 0.592 |
UU419 | thiI | UU419 | UU418 | Conserved hypothetical. | Thiamin biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.829 |
UU420 | UU417 | UU420 | UU417 | Conserved hypothetical. | Conserved hypothetical. | 0.521 |
UU420 | UU419 | UU420 | UU419 | Conserved hypothetical. | Conserved hypothetical. | 0.546 |
UU420 | hrcA | UU420 | UU421 | Conserved hypothetical. | Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. | 0.780 |
UU420 | thiI | UU420 | UU418 | Conserved hypothetical. | Thiamin biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.546 |
dnaE | UU417 | UU415 | UU417 | DNA polymerase III alpha chain 2; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | Conserved hypothetical. | 0.619 |
dnaE | UU419 | UU415 | UU419 | DNA polymerase III alpha chain 2; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | Conserved hypothetical. | 0.526 |
dnaE | pheT | UU415 | UU457 | DNA polymerase III alpha chain 2; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | phenylalanine-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.839 |
dnaE | polA | UU415 | UU414 | DNA polymerase III alpha chain 2; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | DNA polymerase I: 5'-3' exonuclease domain protein; 5'-3' exonuclease acting preferentially on double-stranded DNA. | 0.905 |
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