STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WS0166CARBOXYNORSPERMIDINE DECARBOXYLASE (NSPC); Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. (379 aa)    
Predicted Functional Partners:
WS0167
Conserved hypothetical protein CJ0172C.
 
  
 0.962
speE
SPERMIDINE SYNTHASE SPEE; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 0.921
WS0554
ARGININE DECARBOXYLASE (SPEA); Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
  
 0.787
WS0165
GLPM PROTEIN.
       0.773
rsmH
Conserved hypothetical protein CJ0693C; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
     
 0.689
ACRD
CATION EFFLUX ACRB/ACRD/ACRF FAMILY; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.655
WS0169
Hypothetical protein.
       0.655
WS1166
NADPH OXIDOREDUCTASE.
    
  0.603
PFS
HOMOCYSTEINE NUCLEASE; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
      
 0.593
PUTP
SODIUM/PROLINE SYMPORTER; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.585
Your Current Organism:
Wolinella succinogenes
NCBI taxonomy Id: 273121
Other names: W. succinogenes DSM 1740, Wolinella succinogenes DSM 1740
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