STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WS0890HYPOTHETICAL PROTEIN SA0100. (558 aa)    
Predicted Functional Partners:
WS0889
Z5895 PROTEIN.
  
  
 0.784
bacA
Hypothetical protein.
       0.773
WS0888
Z5896 PROTEIN PUTATIVE MEMBRANE PROTEIN.
       0.773
EXBD
Hypothetical protein.
   
   0.697
EXBB
BIOPOLYMER TRANSPORT PROTEIN EXBB.
       0.678
WS0891
Hypothetical protein.
       0.631
WS0013
Hypothetical protein.
  
     0.574
WS0015
Hypothetical protein.
  
     0.500
WS0881
Hypothetical protein; Belongs to the GHMP kinase family. IspE subfamily.
     
 0.433
SMPB
SMALL PROTEIN B HOMOLOG; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches [...]
       0.413
Your Current Organism:
Wolinella succinogenes
NCBI taxonomy Id: 273121
Other names: W. succinogenes DSM 1740, Wolinella succinogenes DSM 1740
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.