STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WS1483AMINOTRANSFERASE. (374 aa)    
Predicted Functional Partners:
MURC
UDP-N-ACETYLMURAMATE--ALANINE LIGASE; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.981
WS1485
Hypothetical protein.
       0.816
MUTS
PUTATIVE MISMATCH REPAIR PROTEIN; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.816
cysE
PROBABLE 2,3,4, 5-TETRAHYDROPYRIDINE-2-CARBOXYLATEN-SUCCINYLTRANSFERASE PROTEIN; Belongs to the transferase hexapeptide repeat family.
   
 0.693
dapE
DESUCCINYLASE; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
 
  
 0.692
DAPD
PUTATIVE SUCCINYL-TRANSFERASE; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
  
 0.669
WS1482
ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD.
  
 
 0.629
WS1166
NADPH OXIDOREDUCTASE.
   
    0.571
GLTA
CITRATE SYNTHASE; Belongs to the citrate synthase family.
 
 
 0.558
WS1202
GLUTAMATE SYNTHASE, LARGE SUBUNIT.
     
 0.505
Your Current Organism:
Wolinella succinogenes
NCBI taxonomy Id: 273121
Other names: W. succinogenes DSM 1740, Wolinella succinogenes DSM 1740
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