STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEX2_094380Nucleotide-binding, alpha-beta plait. (756 aa)    
Predicted Functional Partners:
PEX2_092630
LUC7-like protein.
   
 0.996
PEX2_105290
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 
 0.990
PEX2_033590
RRM domain-containing protein.
   
 
 0.990
PEX2_064320
SART-1 protein.
   
 
 0.989
PEX2_046780
Nuclear cap-binding protein subunit 2.
   
 
 0.986
PEX2_108270
Uncharacterized protein.
   
 
 0.983
PEX2_020760
Splicing factor PWI.
   
 0.977
PEX2_054020
Cleavage/polyadenylation specificity factor, A subunit, C-terminal.
    
 
 0.975
PEX2_090700
Helicase, C-terminal.
   
 0.972
PEX2_101530
WW/Rsp5/WWP.
  
 
 0.970
Your Current Organism:
Penicillium expansum
NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.