PEX2_098780 protein (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEX2_098780

Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family. (581 aa)

Predicted Functional Partners:

PEX2_075390

0.980

PEX2_008740

0.964

PEX2_020940

0.949

PEX2_103440

0.898

PEX2_017290

0.712

PEX2_034620

0.683

PEX2_019690

0.675

PEX2_105840

0.671

PEX2_036010

0.671

PEX2_048960

0.629

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_008740	PEX2_020940	A0A0A2K8X5	A0A0A2ISV4	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vps5 C-terminal.	0.980
PEX2_008740	PEX2_034620	A0A0A2K8X5	A0A0A2IR79	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.516
PEX2_008740	PEX2_048960	A0A0A2K8X5	A0A0A2ITM2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.801
PEX2_008740	PEX2_075390	A0A0A2K8X5	A0A0A2JVX1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.999
PEX2_008740	PEX2_098780	A0A0A2K8X5	A0A0A2JN26	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.964
PEX2_008740	PEX2_103440	A0A0A2K8X5	A0A0A2I697	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 26.	0.999
PEX2_008740	PEX2_105840	A0A0A2K8X5	A0A0A2JC89	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vps5 C-terminal.	0.775
PEX2_017290	PEX2_019690	A0A0A2J3D8	A0A0A2JZA1	Synaptobrevin.	Epsin-like, N-terminal.	0.749
PEX2_017290	PEX2_020940	A0A0A2J3D8	A0A0A2ISV4	Synaptobrevin.	Vps5 C-terminal.	0.712
PEX2_017290	PEX2_034620	A0A0A2J3D8	A0A0A2IR79	Synaptobrevin.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.817
PEX2_017290	PEX2_036010	A0A0A2J3D8	A0A0A2JXE5	Synaptobrevin.	Uncharacterized protein.	0.694
PEX2_017290	PEX2_048960	A0A0A2J3D8	A0A0A2ITM2	Synaptobrevin.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.698
PEX2_017290	PEX2_075390	A0A0A2J3D8	A0A0A2JVX1	Synaptobrevin.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.467
PEX2_017290	PEX2_098780	A0A0A2J3D8	A0A0A2JN26	Synaptobrevin.	Vacuolar protein sorting-associated protein 17; Plays a role in vesicular protein sorting. Belongs to the VPS17 family.	0.712
PEX2_017290	PEX2_105840	A0A0A2J3D8	A0A0A2JC89	Synaptobrevin.	Vps5 C-terminal.	0.712
PEX2_019690	PEX2_017290	A0A0A2JZA1	A0A0A2J3D8	Epsin-like, N-terminal.	Synaptobrevin.	0.749
PEX2_019690	PEX2_020940	A0A0A2JZA1	A0A0A2ISV4	Epsin-like, N-terminal.	Vps5 C-terminal.	0.775
PEX2_019690	PEX2_034620	A0A0A2JZA1	A0A0A2IR79	Epsin-like, N-terminal.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.970
PEX2_019690	PEX2_036010	A0A0A2JZA1	A0A0A2JXE5	Epsin-like, N-terminal.	Uncharacterized protein.	0.676
PEX2_019690	PEX2_048960	A0A0A2JZA1	A0A0A2ITM2	Epsin-like, N-terminal.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.658