Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PEX2_003180 | PEX2_020830 | A0A0A2K998 | A0A0A2INM0 | DNA-directed RNA polymerase, dimerization. | RNA polymerase II, Rpb4, core. | 0.981 |
PEX2_003180 | PEX2_026090 | A0A0A2K998 | A0A0A2KHG4 | DNA-directed RNA polymerase, dimerization. | NLI interacting factor. | 0.826 |
PEX2_003180 | PEX2_038850 | A0A0A2K998 | A0A0A2JG55 | DNA-directed RNA polymerase, dimerization. | Uncharacterized protein. | 0.947 |
PEX2_003180 | PEX2_038860 | A0A0A2K998 | A0A0A2KCD2 | DNA-directed RNA polymerase, dimerization. | Nucleic acid-binding, OB-fold. | 0.956 |
PEX2_003180 | PEX2_051590 | A0A0A2K998 | A0A0A2I7X0 | DNA-directed RNA polymerase, dimerization. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.964 |
PEX2_003180 | PEX2_066550 | A0A0A2K998 | A0A0A2HZK4 | DNA-directed RNA polymerase, dimerization. | Transcription initiation factor IIF, beta subunit. | 0.969 |
PEX2_003180 | PEX2_093480 | A0A0A2K998 | A0A0A2HZW9 | DNA-directed RNA polymerase, dimerization. | DNA-directed RNA polymerase, dimerization. | 0.831 |
PEX2_005700 | PEX2_026090 | A0A0A2JMH4 | A0A0A2KHG4 | Lipin, N-terminal. | NLI interacting factor. | 0.882 |
PEX2_020830 | PEX2_003180 | A0A0A2INM0 | A0A0A2K998 | RNA polymerase II, Rpb4, core. | DNA-directed RNA polymerase, dimerization. | 0.981 |
PEX2_020830 | PEX2_026090 | A0A0A2INM0 | A0A0A2KHG4 | RNA polymerase II, Rpb4, core. | NLI interacting factor. | 0.813 |
PEX2_020830 | PEX2_038850 | A0A0A2INM0 | A0A0A2JG55 | RNA polymerase II, Rpb4, core. | Uncharacterized protein. | 0.978 |
PEX2_020830 | PEX2_038860 | A0A0A2INM0 | A0A0A2KCD2 | RNA polymerase II, Rpb4, core. | Nucleic acid-binding, OB-fold. | 0.999 |
PEX2_020830 | PEX2_051590 | A0A0A2INM0 | A0A0A2I7X0 | RNA polymerase II, Rpb4, core. | Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. | 0.986 |
PEX2_020830 | PEX2_066550 | A0A0A2INM0 | A0A0A2HZK4 | RNA polymerase II, Rpb4, core. | Transcription initiation factor IIF, beta subunit. | 0.986 |
PEX2_020830 | PEX2_093480 | A0A0A2INM0 | A0A0A2HZW9 | RNA polymerase II, Rpb4, core. | DNA-directed RNA polymerase, dimerization. | 0.999 |
PEX2_026090 | PEX2_003180 | A0A0A2KHG4 | A0A0A2K998 | NLI interacting factor. | DNA-directed RNA polymerase, dimerization. | 0.826 |
PEX2_026090 | PEX2_005700 | A0A0A2KHG4 | A0A0A2JMH4 | NLI interacting factor. | Lipin, N-terminal. | 0.882 |
PEX2_026090 | PEX2_020830 | A0A0A2KHG4 | A0A0A2INM0 | NLI interacting factor. | RNA polymerase II, Rpb4, core. | 0.813 |
PEX2_026090 | PEX2_038850 | A0A0A2KHG4 | A0A0A2JG55 | NLI interacting factor. | Uncharacterized protein. | 0.806 |
PEX2_026090 | PEX2_038860 | A0A0A2KHG4 | A0A0A2KCD2 | NLI interacting factor. | Nucleic acid-binding, OB-fold. | 0.806 |
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