PEX2_012880 protein (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEX2_012880

Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family. (543 aa)

Predicted Functional Partners:

PEX2_075380

0.914

PEX2_022530

0.902

PEX2_105100

0.898

PEX2_017360

0.885

PEX2_033180

0.885

PEX2_018790

0.883

PEX2_103690

0.883

PEX2_052650

0.883

PEX2_054740

0.883

PEX2_054840

0.882

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_012880	PEX2_017360	A0A0A2KSB6	A0A0A2IWQ8	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Isocitrate lyase.	0.885
PEX2_012880	PEX2_018790	A0A0A2KSB6	A0A0A2IGC3	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.883
PEX2_012880	PEX2_022530	A0A0A2KSB6	A0A0A2J275	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Malate synthase; Belongs to the malate synthase family.	0.902
PEX2_012880	PEX2_033180	A0A0A2KSB6	A0A0A2KGG1	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	D-amino-acid oxidase.	0.885
PEX2_012880	PEX2_052650	A0A0A2KSB6	A0A0A2JWY4	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.883
PEX2_012880	PEX2_054740	A0A0A2KSB6	A0A0A2JYI8	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Aldolase-type TIM barrel; Belongs to the DapA family.	0.883
PEX2_012880	PEX2_054840	A0A0A2KSB6	A0A0A2IYR9	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Aldolase-type TIM barrel.	0.882
PEX2_012880	PEX2_075380	A0A0A2KSB6	A0A0A2JY34	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Pyridoxal phosphate-dependent transferase, major region, subdomain 2.	0.914
PEX2_012880	PEX2_103690	A0A0A2KSB6	A0A0A2J4P4	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.883
PEX2_012880	PEX2_105100	A0A0A2KSB6	A0A0A2I5T5	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	Isocitrate lyase.	0.898
PEX2_017360	PEX2_012880	A0A0A2IWQ8	A0A0A2KSB6	Isocitrate lyase.	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	0.885
PEX2_017360	PEX2_022530	A0A0A2IWQ8	A0A0A2J275	Isocitrate lyase.	Malate synthase; Belongs to the malate synthase family.	0.996
PEX2_017360	PEX2_033180	A0A0A2IWQ8	A0A0A2KGG1	Isocitrate lyase.	D-amino-acid oxidase.	0.893
PEX2_017360	PEX2_054840	A0A0A2IWQ8	A0A0A2IYR9	Isocitrate lyase.	Aldolase-type TIM barrel.	0.881
PEX2_017360	PEX2_075380	A0A0A2IWQ8	A0A0A2JY34	Isocitrate lyase.	Pyridoxal phosphate-dependent transferase, major region, subdomain 2.	0.936
PEX2_017360	PEX2_103690	A0A0A2IWQ8	A0A0A2J4P4	Isocitrate lyase.	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.885
PEX2_017360	PEX2_105100	A0A0A2IWQ8	A0A0A2I5T5	Isocitrate lyase.	Isocitrate lyase.	0.885
PEX2_018790	PEX2_012880	A0A0A2IGC3	A0A0A2KSB6	Uncharacterized protein.	Ribosomal protein L22/L17; Belongs to the universal ribosomal protein uL22 family.	0.883
PEX2_018790	PEX2_052650	A0A0A2IGC3	A0A0A2JWY4	Uncharacterized protein.	Uncharacterized protein.	0.847
PEX2_018790	PEX2_075380	A0A0A2IGC3	A0A0A2JY34	Uncharacterized protein.	Pyridoxal phosphate-dependent transferase, major region, subdomain 2.	0.410