PEX2_037570 protein (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PEX2_037570

Helicase, C-terminal; Belongs to the DEAD box helicase family. (525 aa)

Predicted Functional Partners:

PEX2_015190

0.999

PEX2_073400

0.998

PEX2_107720

0.996

PEX2_012760

0.996

PEX2_027570

0.995

PEX2_043530

0.981

PEX2_022220

0.981

LSM1

0.981

PEX2_072890

0.977

PEX2_021030

0.975

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	PEX2_012760	A0A0A2JT10	A0A0A2JI16	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm7.	0.978
LSM1	PEX2_015190	A0A0A2JT10	A0A0A2KBV4	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.847
LSM1	PEX2_021030	A0A0A2JT10	A0A0A2K7U0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Leucine-rich repeat, typical subtype.	0.438
LSM1	PEX2_027570	A0A0A2JT10	A0A0A2J524	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Lsm14 N-terminal.	0.585
LSM1	PEX2_037570	A0A0A2JT10	A0A0A2KXL3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Helicase, C-terminal; Belongs to the DEAD box helicase family.	0.981
LSM1	PEX2_072890	A0A0A2JT10	A0A0A2J8W2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	YjeF N-terminal domain-containing protein.	0.781
LSM1	PEX2_073400	A0A0A2JT10	A0A0A2I0M8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Dcp1-like decapping.	0.839
LSM1	PEX2_107720	A0A0A2JT10	A0A0A2IF88	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Topoisomerase II-associated protein PAT1.	0.975
PEX2_012760	LSM1	A0A0A2JI16	A0A0A2JT10	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.978
PEX2_012760	PEX2_015190	A0A0A2JI16	A0A0A2KBV4	U6 snRNA-associated Sm-like protein LSm7.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.803
PEX2_012760	PEX2_022220	A0A0A2JI16	A0A0A2J2Q4	U6 snRNA-associated Sm-like protein LSm7.	Uncharacterized protein.	0.978
PEX2_012760	PEX2_037570	A0A0A2JI16	A0A0A2KXL3	U6 snRNA-associated Sm-like protein LSm7.	Helicase, C-terminal; Belongs to the DEAD box helicase family.	0.996
PEX2_012760	PEX2_072890	A0A0A2JI16	A0A0A2J8W2	U6 snRNA-associated Sm-like protein LSm7.	YjeF N-terminal domain-containing protein.	0.732
PEX2_012760	PEX2_073400	A0A0A2JI16	A0A0A2I0M8	U6 snRNA-associated Sm-like protein LSm7.	Dcp1-like decapping.	0.848
PEX2_012760	PEX2_107720	A0A0A2JI16	A0A0A2IF88	U6 snRNA-associated Sm-like protein LSm7.	Topoisomerase II-associated protein PAT1.	0.999
PEX2_015190	LSM1	A0A0A2KBV4	A0A0A2JT10	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.847
PEX2_015190	PEX2_012760	A0A0A2KBV4	A0A0A2JI16	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	U6 snRNA-associated Sm-like protein LSm7.	0.803
PEX2_015190	PEX2_021030	A0A0A2KBV4	A0A0A2K7U0	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	Leucine-rich repeat, typical subtype.	0.622
PEX2_015190	PEX2_022220	A0A0A2KBV4	A0A0A2J2Q4	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	Uncharacterized protein.	0.847
PEX2_015190	PEX2_027570	A0A0A2KBV4	A0A0A2J524	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	Lsm14 N-terminal.	0.910