A0A0H2S8T7 protein (Schizopora paradoxa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0H2S8T7

Winged helix DNA-binding domain-containing protein. (293 aa)

Predicted Functional Partners:

A0A0H2RYA1

0.999

A0A0H2S598

0.999

A0A0H2RBZ7

0.982

A0A0H2RZT5

0.970

A0A0H2S3V3

0.964

A0A0H2RK71

0.947

A0A0H2RP71

0.942

A0A0H2RLM3

0.921

A0A0H2RLT3

0.921

A0A0H2RTT4

0.921

Your Current Organism:

Schizopora paradoxa

NCBI taxonomy Id: 27342
Other names: Hyphodontia paradoxa, S. paradoxa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0H2RBZ7	A0A0H2RK71	Uncharacterized protein.	Snf7-domain-containing protein.	0.991
A0A0H2RBZ7	A0A0H2RP71	Uncharacterized protein.	UEV-domain-containing protein.	0.850
A0A0H2RBZ7	A0A0H2RYA1	Uncharacterized protein.	Vps36-domain-containing protein.	0.948
A0A0H2RBZ7	A0A0H2RZT5	Uncharacterized protein.	Snf7-domain-containing protein.	0.987
A0A0H2RBZ7	A0A0H2S3V3	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.943
A0A0H2RBZ7	A0A0H2S598	Uncharacterized protein.	Winged helix DNA-binding domain-containing protein.	0.996
A0A0H2RBZ7	A0A0H2S8T7	Uncharacterized protein.	Winged helix DNA-binding domain-containing protein.	0.982
A0A0H2RK71	A0A0H2RBZ7	Snf7-domain-containing protein.	Uncharacterized protein.	0.991
A0A0H2RK71	A0A0H2RLM3	Snf7-domain-containing protein.	Fungal_trans domain-containing protein.	0.906
A0A0H2RK71	A0A0H2RLT3	Snf7-domain-containing protein.	Fungal_trans domain-containing protein.	0.906
A0A0H2RK71	A0A0H2RP71	Snf7-domain-containing protein.	UEV-domain-containing protein.	0.852
A0A0H2RK71	A0A0H2RTT4	Snf7-domain-containing protein.	Uncharacterized protein.	0.906
A0A0H2RK71	A0A0H2RYA1	Snf7-domain-containing protein.	Vps36-domain-containing protein.	0.943
A0A0H2RK71	A0A0H2RZT5	Snf7-domain-containing protein.	Snf7-domain-containing protein.	0.998
A0A0H2RK71	A0A0H2S3V3	Snf7-domain-containing protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.866
A0A0H2RK71	A0A0H2S598	Snf7-domain-containing protein.	Winged helix DNA-binding domain-containing protein.	0.947
A0A0H2RK71	A0A0H2S8T7	Snf7-domain-containing protein.	Winged helix DNA-binding domain-containing protein.	0.947
A0A0H2RLM3	A0A0H2RK71	Fungal_trans domain-containing protein.	Snf7-domain-containing protein.	0.906
A0A0H2RLM3	A0A0H2RP71	Fungal_trans domain-containing protein.	UEV-domain-containing protein.	0.749
A0A0H2RLM3	A0A0H2RYA1	Fungal_trans domain-containing protein.	Vps36-domain-containing protein.	0.912