A0A0H2SBW3 protein (Schizopora paradoxa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0H2SBW3

CBF-domain-containing protein. (1058 aa)

Predicted Functional Partners:

A0A0H2RYA7

0.996

A0A0H2SUC6

0.993

A0A0H2S1S4

0.987

A0A0H2RRR4

0.986

A0A0H2RLX7

0.985

NOP7

0.982

A0A0H2RDA2

0.980

A0A0H2SD29

0.979

A0A0H2S0P6

0.974

A0A0H2S5D5

0.972

Your Current Organism:

Schizopora paradoxa

NCBI taxonomy Id: 27342
Other names: Hyphodontia paradoxa, S. paradoxa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0H2RDA2	A0A0H2RLX7	A0A0H2RDA2	A0A0H2RLX7	Uncharacterized protein.	DEAD-domain-containing protein.	0.980
A0A0H2RDA2	A0A0H2RRR4	A0A0H2RDA2	A0A0H2RRR4	Uncharacterized protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.935
A0A0H2RDA2	A0A0H2RYA7	A0A0H2RDA2	A0A0H2RYA7	Uncharacterized protein.	Noc2-domain-containing protein.	0.953
A0A0H2RDA2	A0A0H2S0P6	A0A0H2RDA2	A0A0H2S0P6	Uncharacterized protein.	RRM domain-containing protein.	0.957
A0A0H2RDA2	A0A0H2S1S4	A0A0H2RDA2	A0A0H2S1S4	Uncharacterized protein.	RNA-binding domain-containing protein.	0.982
A0A0H2RDA2	A0A0H2SBW3	A0A0H2RDA2	A0A0H2SBW3	Uncharacterized protein.	CBF-domain-containing protein.	0.980
A0A0H2RDA2	A0A0H2SD29	A0A0H2RDA2	A0A0H2SD29	Uncharacterized protein.	Brix-domain-containing protein.	0.980
A0A0H2RDA2	A0A0H2SUC6	A0A0H2RDA2	A0A0H2SUC6	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0H2RDA2	NOP7	A0A0H2RDA2	A0A0H2RZF8	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.889
A0A0H2RLX7	A0A0H2RDA2	A0A0H2RLX7	A0A0H2RDA2	DEAD-domain-containing protein.	Uncharacterized protein.	0.980
A0A0H2RLX7	A0A0H2RRR4	A0A0H2RLX7	A0A0H2RRR4	DEAD-domain-containing protein.	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.960
A0A0H2RLX7	A0A0H2RYA7	A0A0H2RLX7	A0A0H2RYA7	DEAD-domain-containing protein.	Noc2-domain-containing protein.	0.967
A0A0H2RLX7	A0A0H2S0P6	A0A0H2RLX7	A0A0H2S0P6	DEAD-domain-containing protein.	RRM domain-containing protein.	0.934
A0A0H2RLX7	A0A0H2S1S4	A0A0H2RLX7	A0A0H2S1S4	DEAD-domain-containing protein.	RNA-binding domain-containing protein.	0.959
A0A0H2RLX7	A0A0H2S5D5	A0A0H2RLX7	A0A0H2S5D5	DEAD-domain-containing protein.	NUC173-domain-containing protein.	0.835
A0A0H2RLX7	A0A0H2SBW3	A0A0H2RLX7	A0A0H2SBW3	DEAD-domain-containing protein.	CBF-domain-containing protein.	0.985
A0A0H2RLX7	A0A0H2SD29	A0A0H2RLX7	A0A0H2SD29	DEAD-domain-containing protein.	Brix-domain-containing protein.	0.990
A0A0H2RLX7	A0A0H2SUC6	A0A0H2RLX7	A0A0H2SUC6	DEAD-domain-containing protein.	Uncharacterized protein.	0.970
A0A0H2RLX7	NOP7	A0A0H2RLX7	A0A0H2RZF8	DEAD-domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.984
A0A0H2RRR4	A0A0H2RDA2	A0A0H2RRR4	A0A0H2RDA2	NOL1/NOP2/sun family putative RNA met; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.935