A0A0H2SEN3 protein (Schizopora paradoxa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0H2SEN3

Ras GEF. (857 aa)

Predicted Functional Partners:

A0A0H2RNF6

0.894

A0A0H2QZ92

0.865

A0A0H2R511

0.864

A0A0H2RN89

0.864

A0A0H2RNJ3

0.864

A0A0H2SDE2

0.864

A0A0H2SFH3

0.864

A0A0H2SMA7

0.848

A0A0H2R1A8

0.846

A0A0H2REB2

0.846

Your Current Organism:

Schizopora paradoxa

NCBI taxonomy Id: 27342
Other names: Hyphodontia paradoxa, S. paradoxa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0H2QZ92	A0A0H2R1A8	Kinase-like protein.	Small GTPase-binding protein.	0.660
A0A0H2QZ92	A0A0H2R511	Kinase-like protein.	Uncharacterized protein.	0.633
A0A0H2QZ92	A0A0H2REB2	Kinase-like protein.	Uncharacterized protein.	0.660
A0A0H2QZ92	A0A0H2RN89	Kinase-like protein.	Ras-like protein.	0.633
A0A0H2QZ92	A0A0H2RNF6	Kinase-like protein.	SH3-domain-containing protein.	0.970
A0A0H2QZ92	A0A0H2RNJ3	Kinase-like protein.	Uncharacterized protein.	0.633
A0A0H2QZ92	A0A0H2SDE2	Kinase-like protein.	Uncharacterized protein.	0.633
A0A0H2QZ92	A0A0H2SEN3	Kinase-like protein.	Ras GEF.	0.865
A0A0H2QZ92	A0A0H2SFH3	Kinase-like protein.	Ras protein.	0.633
A0A0H2QZ92	A0A0H2SMA7	Kinase-like protein.	Small GTPase.	0.617
A0A0H2R1A8	A0A0H2QZ92	Small GTPase-binding protein.	Kinase-like protein.	0.660
A0A0H2R1A8	A0A0H2R511	Small GTPase-binding protein.	Uncharacterized protein.	0.850
A0A0H2R1A8	A0A0H2REB2	Small GTPase-binding protein.	Uncharacterized protein.	0.886
A0A0H2R1A8	A0A0H2RN89	Small GTPase-binding protein.	Ras-like protein.	0.879
A0A0H2R1A8	A0A0H2RNF6	Small GTPase-binding protein.	SH3-domain-containing protein.	0.695
A0A0H2R1A8	A0A0H2RNJ3	Small GTPase-binding protein.	Uncharacterized protein.	0.880
A0A0H2R1A8	A0A0H2SDE2	Small GTPase-binding protein.	Uncharacterized protein.	0.862
A0A0H2R1A8	A0A0H2SEN3	Small GTPase-binding protein.	Ras GEF.	0.846
A0A0H2R1A8	A0A0H2SFH3	Small GTPase-binding protein.	Ras protein.	0.876
A0A0H2R511	A0A0H2QZ92	Uncharacterized protein.	Kinase-like protein.	0.633