STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_9864g1Uncharacterized protein. (198 aa)    
Predicted Functional Partners:
VP01_517g1
Uncharacterized protein.
   
 0.549
VP01_1121g4
Uncharacterized protein.
   
 0.549
VP01_70g10
Cellulase domain-containing protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
  0.539
VP01_915g14
UDP-glucose 6-dehydrogenase.
     
 0.516
VP01_473g4
Uncharacterized protein.
     
 0.514
VP01_153g7
Alanine transaminase.
     
 0.513
VP01_2824g3
Uncharacterized protein.
     
 0.508
VP01_1268g1
Uncharacterized protein.
     
 0.508
VP01_937g3
Uncharacterized protein.
   
 0.504
VP01_679g8
Cytochrome P450 monooxygenase; Belongs to the cytochrome P450 family.
   
 0.504
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.