STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_976g5Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (675 aa)    
Predicted Functional Partners:
VP01_3316g1
Cytochrome c oxidase subunit VIb.
   
 0.877
VP01_3323g1
Beta-hexosaminidase.
 
  
 0.853
VP01_3990g1
Beta-hexosaminidase.
 
  
 0.852
VP01_198g1
Uncharacterized protein.
   
 0.842
VP01_251g7
Uncharacterized protein.
   
 0.831
VP01_327g5
Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family.
   
 0.772
VP01_359g9
Uncharacterized protein.
   
 0.766
VP01_2233g4
Uncharacterized protein.
   
 0.750
VP01_3199g2
BZIP domain-containing protein.
   
 0.727
VP01_989g5
Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.
  
  
  0.724
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.