STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_938g4PCI domain-containing protein. (418 aa)    
Predicted Functional Partners:
VP01_3g11
PCI domain-containing protein.
  
 
 0.999
VP01_465g7
Uncharacterized protein.
   
 0.998
VP01_212g2
COP9 signalosome complex subunit 5.
    
 0.998
VP01_1201g6
PCI domain-containing protein.
    
 0.998
VP01_730g1
MPN domain-containing protein.
    
 0.991
VP01_1073g10
PCI domain-containing protein.
    
 0.988
VP01_3277g1
Ubiquitin-like protein 1.
    
 0.944
VP01_744g3
RING-box protein 1.
   
 0.933
VP01_902g2
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.932
VP01_623g2
Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
 0.924
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
Server load: low (14%) [HD]