VP01_85g2 protein (Puccinia sorghi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VP01_85g2

Uncharacterized protein. (288 aa)

Predicted Functional Partners:

VP01_1536g4

0.507

VP01_3310g3

0.502

VP01_2736g7

0.502

VP01_1g3

0.502

VP01_370g2

0.489

VP01_1174g2

0.489

VP01_310g11

0.473

VP01_2308g1

0.471

VP01_3157g3

0.461

VP01_1058g7

0.454

Your Current Organism:

Puccinia sorghi

NCBI taxonomy Id: 27349
Other names: P. sorghi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VP01_1058g7	VP01_1174g2	A0A0L6VTY9	A0A0L6VR79	Uncharacterized protein.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.572
VP01_1058g7	VP01_1536g4	A0A0L6VTY9	A0A0L6VIE7	Uncharacterized protein.	acidPPc domain-containing protein.	0.856
VP01_1058g7	VP01_1g3	A0A0L6VTY9	A0A0L6VBA0	Uncharacterized protein.	Uncharacterized protein.	0.561
VP01_1058g7	VP01_2308g1	A0A0L6VTY9	A0A0L6V7T8	Uncharacterized protein.	DAGKc domain-containing protein.	0.887
VP01_1058g7	VP01_2736g7	A0A0L6VTY9	A0A0L6V394	Uncharacterized protein.	acidPPc domain-containing protein.	0.561
VP01_1058g7	VP01_310g11	A0A0L6VTY9	A0A0L6UZD8	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.728
VP01_1058g7	VP01_3310g3	A0A0L6VTY9	A0A0L6UZ78	Uncharacterized protein.	acidPPc domain-containing protein.	0.561
VP01_1058g7	VP01_370g2	A0A0L6VTY9	A0A0L6UU33	Uncharacterized protein.	AP-1 complex subunit gamma.	0.572
VP01_1058g7	VP01_85g2	A0A0L6VTY9	A0A0L6U9M3	Uncharacterized protein.	Uncharacterized protein.	0.454
VP01_1174g2	VP01_1058g7	A0A0L6VR79	A0A0L6VTY9	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.572
VP01_1174g2	VP01_2308g1	A0A0L6VR79	A0A0L6V7T8	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	DAGKc domain-containing protein.	0.687
VP01_1174g2	VP01_310g11	A0A0L6VR79	A0A0L6UZD8	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Endo/exonuclease/phosphatase domain-containing protein.	0.621
VP01_1174g2	VP01_3157g3	A0A0L6VR79	A0A0L6UYU9	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.502
VP01_1174g2	VP01_370g2	A0A0L6VR79	A0A0L6UU33	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	AP-1 complex subunit gamma.	0.556
VP01_1174g2	VP01_85g2	A0A0L6VR79	A0A0L6U9M3	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.489
VP01_1536g4	VP01_1058g7	A0A0L6VIE7	A0A0L6VTY9	acidPPc domain-containing protein.	Uncharacterized protein.	0.856
VP01_1536g4	VP01_1g3	A0A0L6VIE7	A0A0L6VBA0	acidPPc domain-containing protein.	Uncharacterized protein.	0.622
VP01_1536g4	VP01_2308g1	A0A0L6VIE7	A0A0L6V7T8	acidPPc domain-containing protein.	DAGKc domain-containing protein.	0.961
VP01_1536g4	VP01_2736g7	A0A0L6VIE7	A0A0L6V394	acidPPc domain-containing protein.	acidPPc domain-containing protein.	0.622
VP01_1536g4	VP01_310g11	A0A0L6VIE7	A0A0L6UZD8	acidPPc domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.816