STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_802g3Uncharacterized protein. (295 aa)    
Predicted Functional Partners:
VP01_1440g3
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.964
VP01_1055g4
Ribosomal_S10 domain-containing protein.
   
 
 0.963
rpsB-2
Ribosomal protein S2.
   
 
 0.962
VP01_1900g2
Uncharacterized protein.
   
 
 0.956
VP01_539g4
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 
 0.948
VP01_1566g12
Uncharacterized protein.
   
 
 0.943
VP01_2109g2
Sod_Fe_C domain-containing protein.
   
 
 0.942
VP01_160g10
MRP-S28 domain-containing protein.
   
 
 0.941
VP01_2904g2
Uncharacterized protein.
   
 
 0.940
VP01_4326g1
Uncharacterized protein.
   
   0.938
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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