STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_5940g1Phenylalanine ammonia-lyase. (228 aa)    
Predicted Functional Partners:
VP01_1902g1
Histidine biosynthesis trifunctional protein.
    
 0.795
rocF
Arginase; Belongs to the arginase family.
  
 
 0.765
VP01_3514g1
Amidohydro-rel domain-containing protein.
  
 
 0.722
VP01_762g3
Aminotran_1_2 domain-containing protein.
    
 0.671
VP01_392g7
Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.
    
 0.563
aroC
Chorismate synthase.
    
 0.548
VP01_176g6
Uncharacterized protein.
    
 0.536
VP01_4373g1
Chorismate mutase.
     
 0.521
VP01_84g7
Aminotransferase.
   
 
 0.509
VP01_323g4
Uncharacterized protein.
    
 0.509
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.