Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VP01_596g7Uncharacterized protein. (820 aa)    
Predicted Functional Partners:
VP01_865g2
Uncharacterized protein.
    
 0.734
VP01_334g3
EGF-like domain-containing protein.
    
 0.596
VP01_211g4
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.565
VP01_210g19
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.565
VP01_124g4
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.565
VP01_1000g3
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.558
VP01_1193g10
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.558
VP01_14g2
SNW domain-containing protein 1.
    
  0.551
VP01_685g7
Histone acetyltransferase.
    
  0.505
GHPOD
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
    
  0.497
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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