STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_570g5MBOAT_2 domain-containing protein. (406 aa)    
Predicted Functional Partners:
VP01_3612g1
Rab family protein.
    
 0.728
VP01_2823g4
Uncharacterized protein.
    
 0.728
VP01_2386g1
Uncharacterized protein.
    
 0.728
VP01_1911g3
Rab family protein.
    
 0.728
VP01_1008g6
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.695
VP01_592g15
Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.645
VP01_2637g3
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.553
rpsC
Ribosomal protein S3.
    
  0.552
VP01_2125g4
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase.
   
 0.552
VP01_436g8
Importin subunit alpha; Belongs to the importin alpha family.
   
 0.551
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.