STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_568g3Uncharacterized protein. (629 aa)    
Predicted Functional Partners:
VP01_3100g2
Histone-binding protein RBBP4.
    
 0.904
VP01_555g5
Uncharacterized protein.
    
 0.780
VP01_601g2
Histone deacetylase 1/2.
    
 0.659
VP01_475g12
Histone deacetylase.
    
 0.659
VP01_4645g1
Uncharacterized protein.
    
 0.659
VP01_3811g1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.659
VP01_119g1
Uncharacterized protein.
    
 0.659
VP01_10g9
Hist_deacetyl domain-containing protein.
    
 0.659
VP01_395g8
Uncharacterized protein.
    
  0.514
VP01_242g3
Hist_deacetyl domain-containing protein.
    
  0.514
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.