STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_563g1Uncharacterized protein. (804 aa)    
Predicted Functional Partners:
VP01_518g4
Structural maintenance of chromosomes protein.
   
 0.999
VP01_130g16
SCD domain-containing protein.
   
 0.999
VP01_439g2
Uncharacterized protein.
   
 0.997
VP01_429g2
Sister chromatid cohesion protein.
   
 0.996
VP01_1906g3
PLK/PLK1 protein kinase.
   
 0.990
VP01_3218g3
SMC_N domain-containing protein.
   
 0.985
VP01_3218g4
SMC hinge domain-containing protein.
   
 0.985
VP01_411g1
SMC_N domain-containing protein.
   
 0.952
VP01_737g3
WEE protein kinase, variant.
   
 
 0.948
VP01_19g9
UmuC domain-containing protein.
   
 0.944
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.