STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_5g7Uncharacterized protein. (174 aa)    
Predicted Functional Partners:
VP01_541g7
Uncharacterized protein.
   
 0.979
VP01_1737g3
ThiF domain-containing protein.
  
 0.972
VP01_609g10
Uncharacterized protein.
    
 0.970
pcn
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.960
VP01_37g1
Uncharacterized protein.
    
 0.948
VP01_1553g5
Ubiquitin-like domain-containing protein.
   
 0.947
VP01_1011g4
Ubiquitin-like domain-containing protein.
   
 0.947
VP01_108g4
SP-RING-type domain-containing protein.
    
 0.943
VP01_77g3
Uncharacterized protein.
    
 0.940
VP01_2438g4
Ubiquitin-conjugating enzyme E2.
    
 0.927
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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