STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_549g3Foie-gras_1 domain-containing protein. (1359 aa)    
Predicted Functional Partners:
VP01_72g5
Uncharacterized protein.
    
 0.998
VP01_514g10
Uncharacterized protein.
    
 0.998
VP01_3001g2
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.998
VP01_265g13
Uncharacterized protein.
    
 0.998
VP01_257g4
Uncharacterized protein.
    
 0.998
VP01_1767g2
Uncharacterized protein.
    
 0.998
VP01_103g4
Uncharacterized protein.
   
 0.998
VP01_2507g2
Uncharacterized protein.
   
 0.997
VP01_343g8
Uncharacterized protein.
   
 0.990
VP01_457g17
Uncharacterized protein.
   
 0.963
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.