STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_514g5Acyl-CoA dehydrogenase. (479 aa)    
Predicted Functional Partners:
VP01_158g8
APH domain-containing protein.
 
     0.951
VP01_685g9
CP-type G domain-containing protein.
 
      0.899
VP01_647g3
AlcB domain-containing protein.
   
 0.868
VP01_1501g2
Glutaryl-CoA dehydrogenase.
  
 0.866
VP01_30g11
Isovaleryl-CoA dehydrogenase.
 
0.843
VP01_2029g2
Uncharacterized protein.
 
0.842
VP01_3396g2
Acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.841
VP01_1179g3
MaoC-like domain-containing protein.
  
 0.830
VP01_1162g1
Uncharacterized protein.
  
 0.830
VP01_951g10
Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.811
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.