STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_510g17WLM domain-containing protein. (301 aa)    
Predicted Functional Partners:
VP01_963g2
Uncharacterized protein.
    
 
 0.760
VP01_1553g5
Ubiquitin-like domain-containing protein.
    
 
 0.706
VP01_1011g4
Ubiquitin-like domain-containing protein.
    
 
 0.706
VP01_2048g2
ULP_PROTEASE domain-containing protein.
    
 
 0.578
VP01_1561g1
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...]
    
 
 0.529
VP01_968g2
WLM domain-containing protein.
    
 
 0.515
VP01_2309g2
Cell division cycle protein 48.
    
 
 0.404
VP01_1488g6
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 
 0.404
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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