STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_473g4Uncharacterized protein. (546 aa)    
Predicted Functional Partners:
VP01_1865g5
BUD22 domain-containing protein.
     
 0.820
VP01_199g13
Uncharacterized protein.
     
 0.770
VP01_941g7
Uncharacterized protein.
     
 0.758
VP01_2425g1
Abhydro_lipase domain-containing protein.
     
 0.758
VP01_2872g6
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.748
VP01_72g9
Uncharacterized protein.
     
 0.665
VP01_2255g5
3Beta_HSD domain-containing protein.
     
 0.665
VP01_1352g1
RmlD_sub_bind domain-containing protein.
     
 0.665
VP01_872g4
Uncharacterized protein.
     
 0.655
VP01_901g2
Uncharacterized protein.
     
 0.606
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.