STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_47g3Uncharacterized protein. (884 aa)    
Predicted Functional Partners:
VP01_697g11
WD_REPEATS_REGION domain-containing protein.
   
 0.900
VP01_494g2
Uncharacterized protein.
   
 0.896
VP01_1391g2
Uncharacterized protein.
    
 0.892
VP01_1912g2
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.888
VP01_641g2
Nsp1_C domain-containing protein.
    
 0.885
VP01_1921g3
Nup54 domain-containing protein.
   
 0.876
VP01_5349g2
Uncharacterized protein.
    
 0.852
VP01_1101g1
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.828
VP01_2729g3
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.820
VP01_4891g1
Uncharacterized protein.
   
 0.815
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.