STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_432g2Uncharacterized protein. (315 aa)    
Predicted Functional Partners:
VP01_3213g4
Aminotran_1_2 domain-containing protein.
    
 
 0.954
VP01_2280g2
Serine palmitoyltransferase.
    
 
 0.858
VP01_1022g10
Aminotran_1_2 domain-containing protein.
    
 
 0.858
VP01_1947g4
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
    
 
 0.754
VP01_1437g3
Aminotran_1_2 domain-containing protein.
    
 
 0.754
VP01_300g4
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit WBP1; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the [...]
    
   0.567
VP01_1345g2
SAC domain-containing protein.
    
 
 0.556
VP01_177g9
Uncharacterized protein.
    
   0.530
VP01_3129g3
Sphinganine-1-phosphate aldolase.
    
 
 0.433
VP01_664g3
Non-specific serine/threonine protein kinase.
   
 
 0.422
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.