STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_3970g1Uncharacterized protein. (366 aa)    
Predicted Functional Partners:
VP01_869g3
Uncharacterized protein.
  
    0.595
VP01_1808g4
SCP2 domain-containing protein.
   
 0.560
VP01_433g12
Prohibitin.
    
 0.516
VP01_433g3
Prohibitin.
    
 0.516
VP01_433g13
Prohibitin.
    
 0.516
VP01_2373g8
Prohibitin.
    
 0.516
VP01_1207g7
Uncharacterized protein.
    
 0.506
VP01_514g12
AFG3 family protein.
     
 0.412
VP01_359g6
Mitochondrial chaperone BCS1; Belongs to the AAA ATPase family.
     
 0.412
VP01_326g3
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
     
 0.412
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.