STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_416g5Uncharacterized protein. (1190 aa)    
Predicted Functional Partners:
VP01_865g2
Uncharacterized protein.
    
 0.840
VP01_1562g4
Uncharacterized protein.
    
  0.655
VP01_2214g1
Uncharacterized protein.
    
  0.544
VP01_334g3
EGF-like domain-containing protein.
   
 0.534
VP01_207g5
WD_REPEATS_REGION domain-containing protein.
    
  0.503
VP01_15g11
Uncharacterized protein.
    
  0.503
VP01_2213g1
TPR_REGION domain-containing protein.
    
  0.464
VP01_2168g2
CRM1_C domain-containing protein.
    
  0.464
VP01_211g4
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.429
VP01_210g19
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.429
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.