STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP01_395g8Uncharacterized protein. (900 aa)    
Predicted Functional Partners:
VP01_634g3
Response regulatory domain-containing protein.
    
 0.979
VP01_3100g2
Histone-binding protein RBBP4.
   
 0.911
VP01_125g10
Uncharacterized protein.
    
 0.888
VP01_1427g4
GATA-type domain-containing protein.
    
 0.885
VP01_2303g2
Histone H2B; Belongs to the histone H2B family.
    
 0.878
VP01_233g11
Histone H2B; Belongs to the histone H2B family.
    
 0.878
VP01_3225g3
Uncharacterized protein.
    
 0.871
VP01_131g5
SANT domain-containing protein.
    
 0.871
VP01_684g6
Histone H2A; Belongs to the histone H2A family.
    
 0.863
VP01_1200g9
Histone H2A; Belongs to the histone H2A family.
    
 0.863
Your Current Organism:
Puccinia sorghi
NCBI taxonomy Id: 27349
Other names: P. sorghi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.